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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST004366
species: Oryza sativa
miRNA family: MIRf1548
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCAGTTTCATCTGCTTGTGG

miRNA*
 ATTAGGAGCTGAAGCTGCCAG

mismatches: 4
bulges: 0
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pre-miRNA
 CTTGATTGTTGAGGTGCAACCATTAGGAGCTGAAGCTGCCAGCATGATCTGATGAGTGCTTATTAGGTGAGGGCAGAATTGACTGCCAAAACAAAGATCA
GATCATGCTGTGCAGTTTCATCTGCTTGTGGCTGCACAAAATTAAAGGG

dot-bracket secondary structure
.((((((......(((((.((((.((.((.(((((((((((((((((((((((.....(((.....((...(((((......)))))...)).)))))))
)))))))))).))))))))).)).)).)))).)))))..))))))....


SIMILARITIES
miRBase osa-MIR167d: 9e-58

PMRD osa-miRf11209-akr: 4e-66

microPC miR167: 0.0000005		UniProt no hits

RFAM MIR167_1: 2e-59		most similar mature miRNAs

Identical with: osa-miR167n from PMRD (MNEST048870)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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